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Major Publications
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Papers (peer-reviewed)
1. Schoner, B., Cooper, C., Douglas, C. L., Boyden, E. S., Gershenfeld, N.
A. (1999) “Data-driven
modeling of acoustical instruments,” Journal of the Acoustic Society of America 105(2):1328.
2. Maguire, Y.,
Boyden, E. S., Gershenfeld, N. (2000) Toward a table-top quantum
computer, IBM Systems
Journal 39:3&4, p.823.
3. Boyden, E. S., Raymond, J. L. (2003) Active reversal of motor memories
reveals rules governing memory encoding, Neuron 39(6):1031-42.
4. Boyden, E. S., Katoh, A., Raymond,
J. L. (2004) Cerebellum-dependent learning: The role of multiple plasticity
mechanisms, Annual Review of
Neuroscience 27:581-609.
5. Kimpo, R. R.*, Boyden, E. S.*, Katoh, A., Ke, M. C.,
Raymond, J. L. (2005) Distinct
patterns of stimulus generalization of increases and decreases in VOR gain,
Journal of Neurophysiology
94(5):3092-3100. (* equal co-first
authors)
6. Boyden, E. S., Zhang, F., Bamberg, E., Nagel, G., Deisseroth, K.
(2005) Millisecond-timescale,
genetically-targeted optical control of neural activity, Nature Neuroscience 8(9):1263-1268.
7. Boyden, E. S., Katoh, A., Pyle, J. L., Chatila, T.
A., Tsien, R. W., Raymond, J. L. (2006) Selective engagement of plasticity
mechanisms for motor memory storage, Neuron
51(6):823-834.
8. Zhang, F., Wang, L.-P., Boyden, E. S., Deisseroth, K.
(2006) Optical control of excitable cells and Channelrhodopsin-2, Nature Methods 3(10):785-92.
9. Han X., Boyden E. S. (2007) Multiple-Color Optical
Activation, Silencing, and Desynchronization of Neural Activity, with
Single-Spike Temporal Resolution, PLoS ONE 2(3):e299. doi:10.1371/journal.pone.0000299.
10. Wang, H.,
Peca, J., Matsusaki, M., Matsusaki, K., Noguchi, J., Qiu, L., Wang, D.,
Zhang, F., Boyden, E. S., Deisseroth, K., Kasai, H., Hall, W. C., Feng, G.,
Augustine, G. J. (2007) High-speed mapping of synaptic connectivity using
photostimulation in channelrhodopsin-2 transgenic mice, Proceedings of the National Academy of Sciences
104(19):8143-848.
11. Liao, Y. J.,
Safa, P., Chen, Y.-R., Sobel, R. A., Boyden, E. S., Tsien, R. W. (2008) Anti-Ca2+
channel antibody attenuates Ca2+ currents and mimics
cerebellar ataxia in vivo, Proceedings of the National Academy of
Sciences 105(7):2705-2710.
12. Boyden, E.
S., Safa, P., Pyle, J. L., Neogi, M., Raymond, J. L., Tsien, R. W., (2007) Learning-specific
patterns of gene expression identify a site of motor plasticity, (in preparation).
Talks/conference papers (peer-reviewed)
1. Fletcher, R., Omojola, O., Boyden, E. S., Gershenfeld, N. (1999) “Reconfigurable Agile Tag Reader
Technologies for Combined EAS and RFID capability,” Conference
paper in Proceedings of the
Second IEEE Workshop on Automatic Identification Advanced Technologies,
Summit, New Jersey.
2. Fletcher, R., Omojola, O., Boyden, E., Gershenfeld,
N.. (2002) "The Design of Agile RFID Tags as a Catalyst for RFID
Standardization," 3rd IEEE Conference on Automatic Identification
Technologies.
3. Boyden, E. S., Tsien, R. W., Chatila, T. A., Raymond,
J. L. (2003) "Is oppositely directed motor learning implemented with
inverse plasticity mechanisms?" Talk, at Advances
in Computational Motor Control II, Symposium at the Annual
Society for Neuroscience Meeting, New
Orleans, Louisiana.
4. Boyden, E. S., Chatila, T. A., Raymond, J. L. (2004)
"The contribution of inverse plasticity mechanisms to
cerebellum-dependent learning." Talk, at Computational
and Systems Neuroscience (CoSyNe), Cold Spring Harbor, NY,
March 24-28, 2004.
5. Han, X., and Boyden, E. S. (2007) "Multiple-color
optical activation, silencing and desynchronization of neural activity,
with single-spike temporal resolution," Spotlight Presentation, at Computational
and Systems Neuroscience (CoSyNe), Salt
Lake City, UT,
Feb 22-25, 2007.
6.
Bernstein, J., Han, X., Henninger, M., Ko, E., Qian, X., Talei
Franzesi, G., McConnell, J., Stern, P., Desimone, R., Boyden, E. S., (2008)
“Prosthetic Systems for Therapeutic Optical Activation and Silencing of Genetically-Targeted
Neurons,” Proceedings of the SPIE
Vol. 6854, 68540H:1-11, Optical
Interactions with Tissue and Cells XIX, Steven L. Jacques; William P.
Roach; Robert J. Thomas, Editors.
Patents and Patent Applications
103
patents or patents pending.
Theses
1. Boyden, E. S. (1999) Quantum Computing:
Theory and Implementation, Master's Thesis in Electrical Engineering and Computer Science,
Bachelor's Thesis in Physics, Massachusetts Institute of
Technology.
2. Boyden, E. S. (2005) Task-selective neural mechanisms
of memory encoding, Ph. D.
Thesis in Neurosciences, Stanford University.
Byline Articles
1.
Boyden, E. S. (2000) “Computational
and Theoretical Neuroscience: From Synapse to Circuitry,” National Institutes of Health/National
Institute of Neurological Disorders and Stroke, Technical Report
for Workshop of April 28, 2000.
2. Boyden, E. S. (2007)
“Engineering the Brain (‘Notebooks’ column),” Technology Review, March/April 2007 issue, p. 34-35. Featured on MIT
homepage.
3. Boyden, E. S. "In Pursuit of Human
Augmentation." Ed Boyden's Blog. Technology Review. 9/17/07.
(http://www.technologyreview.com/blog/boyden/21839/).
4. Boyden, E. S. "Open Philanthropy." Ed Boyden's
Blog. Technology Review. 9/24/07.
(http://www.technologyreview.com/blog/boyden/21850/).
5. Boyden,
E. S. "Synthetic Neurobiology." Ed Boyden's Blog. Technology Review. 10/9/07.
(http://www.technologyreview.com/blog/boyden/21871/).
6. Boyden, E. S. "How to Think." Ed Boyden's
Blog. Technology Review. 11/13/07.
(http://www.technologyreview.com/blog/boyden/21925/). Featured
on MIT homepage.
7. Boyden, E. S. "Training a Generation of
Neuroengineers." Ed Boyden's Blog, Technology Review. 4/22/08.
(http://www.technologyreview.com/blog/boyden/22055/).
Other writings
1. Boyden, E. S.
(1996) “The Practical Physicist's OpenGL tutorial,” Online.
2.
Boyden, E. S. (1997) “Tree-based Cluster Weighted Modeling: Towards A
Massively Parallel Real-Time Digital Stradivarius,” Online.
3.
Boyden, E. S. (1997) “A physics-based animation engine,” Online.
4.
Altshuler, R. C., Boyden, E. S., Chase, C. C., Davis, B. M., Delatorre, F.
J., Edelson, J., Elgart, J. D., Gates, H. G., Hancher, M. D., Hasan, L. M.,
Huang, A. S., Knaian, A. N., Lee, F., Newburg, S. O., Polito, B. F.,
Reynolds, M. S., Smith, E. D., Warmann, E. C. (1998) “The ORCA-1: An
Autonomous Underwater Vehicle,” Online.
5.
Boyden, E. S., El Rifai, O., Hubert, B., Karpman, M., Roberts, D. (1999) “A
High-Performance Tunneling Accelerometer,” Online.
Invited
talks
1. Boyden, E. S. (2003) “How multiple plasticity
mechanisms contribute to versatile motor learning,” Invited talk, Stanford
Neurosciences Program 2003 Retreat, Monterey,
CA.
2.. Boyden, E. S. (2005) “Causal roles of neurons and
neural circuits in learning and behavior,” Invited talk, Hertz Foundation Scholars 2005 Retreat, Pt. Reyes, CA.
3. Boyden, E. S. (2006) “Solving the brain systematically:
tools for the analysis and engineering of neural circuits,” Invited talk, Google Tech Talk
series, Google, Mountain View, CA.
4. Boyden, E. S. (2006) “Cutting-edge technologies for
the systematic analysis of neural circuit dynamics,” Invited talk, UCSF, Program in Bioengineering Seminar Series, San Francisco, CA.
5. Boyden, E. S. (2006) “Resolving the computational
role of specific neural circuit elements,” Invited talk, McGovern Institute, MIT, Cambridge, MA.
6. Boyden, E. S. (2006) “Towards the analysis of cortical computation via optical
control of neural activity,” Invited
talk, Computation and Neural Systems, Caltech, Pasadena, CA.
7. Boyden, E. S.
(2006) “Enabling technologies for controlling neural circuit functions,” Invited talk, Brain Science Program,
Brown University,
Providence, RI.
8. Boyden, E. S. (2006) “Technologies
for the systematic analysis of neural circuit function,” Invited talk, Center for Brain
Science, Harvard University, Cambridge, MA.
9. Boyden,
E. S. (2006) “Neural Circuit Technology: Towards New Brain Interfaces and
Biological Tools,” Invited talk,
MIT Media Laboratory, MIT, Cambridge,
MA.
10.
Boyden, E. S. (2006) “Engineering tools for engineering the brain,” Invited talk, Division of Engineering,
Brown University,
Providence, RI.
11. Boyden, E. S. (2006) “Ultraprecise biological interfaces:
Controlling life with light,” Opening
night talk, Science Foo Camp, Google, Mountain View, CA..
12. Boyden, E. S. (2006) “Launching the Open Brain Stimulator
Project,” Session leader, Foo
Camp, O’Reilly Media, Sebastopol,
CA.
13. Boyden, E. S. (2006) “The future of neural devices,” Invited talk, Stanford Biodesign Program,
Stanford, CA.
14. Boyden, E. S. (2006) “Systematic approaches for understanding
neural circuit function,” Invited talk,
Center for Basic Neuroscience, UT
Southwestern Medical School, Dallas, TX.
15. Boyden, E. S. (2007), “Technologies for the
Precise Control of Neural Circuits,” Invited
talk, Sloan-Swartz Seminars on Theoretical Neurobiology, Salk Institute
for Biological Studies, San Diego, CA.
16.
Boyden, E. S. (2007) “New Technologies for Repairing Neural Computations,” Invited talk, The Stanley Center for
Psychiatric Research, MIT, Cambridge,
MA.
17.
Boyden, E. S. (2007) “Technologies for engineering neural circuit
function,” Invited talk, Department
of Biological Engineering, MIT, Cambridge,
MA.
18. Boyden, E. S. (2007) “Engineering the
Brain: Towards Systematic Cures for Neural Disorders,” Featured speaker, MIT Media Lab H2.0 (Human 2.0) Symposium,
MIT, Cambridge, MA.
19.
Boyden, E. S. (2007) “Engineering the Brain,” Invited talk, Department of Psychiatry, Harvard/MGH, Boston, MA.
20.
Boyden, E. S. (2007) “Towards
enabling ultraprecise optical prosthetics,” Invited talk, Massachusetts Eye and Ear Infirmary, Boston, MA.
21.
Boyden, E. S. (2007) “Brain-Engineering Technologies: Towards Making us
Smarter and
Happier,” Invited talk, AARP
National Event and Expo, Boston,
MA.
22. Boyden, E. S. (2007)
“Engineering the Brain,” Featured
speaker, Emerging Technologies
(aka TR ETC, EmTech) Conference at MIT, Sept. 25-27, 2007
23.
Boyden, E. S. (2007) “Towards ultraprecise
optical prosthetics for treating pain: enabling technologies and testing,”
Invited speaker, MGH-Charlestown, Boston, MA.
24.
Boyden, E. S. (2007) “Controlling neural circuits: towards synthetic
neurobiology,” Invited speaker,
Harvard University Division of Applied Sciences, Cambridge, MA.
25.
Boyden, E. S. (2007) “Principles of
controlling neural circuit functions: towards synthetic neurobiology,”
Invited speaker, Intel
Corporation, Santa Clara,
CA.
26.
Boyden, E. S. (2007) “Neural Control Technologies and Uses Thereof,” Invited speaker, Innerspace
Foundation, Boston, MA.
27.
Boyden, E. S. (2008) “Towards a New Generation of Intelligent Brain
Interfaces,” Invited speaker, Canon.
28.
Boyden, E. S. (2008) “Engineering the brain,” Invited speakrer, Honda.
29.
Boyden, E. S. (2008) “Talking to the Mind: New Approaches to Engineering
the Brain,” Invited speaker, The
International House of Japan.
30.
Boyden, E. S. (2008) “New Ideas on how to Get Information Into and Out of
the Brain,” Invited speaker, NEC.
31.
Boyden, E. S. (2008) “New Ideas on how to Get Information Into and Out of
the Brain,” Invited speaker, Hitachi.
31.
Boyden, E. S. (2008) “Optical Neuron Control: Understanding and Engineering
Normal and Pathological Neural Dynamics,” Invited speaker, Boston
University.
32.
Boyden, E. S. (2008) “Genetically-Targeted Optical Neuromodulation: Towards
Circuitwide Control of Normal
and Pathological Neural Computation,” Speaker
(and workshop organizer/session chair), Computational and Systems
Neuroscience (CoSyNe) Workshop, Snowbird, UT.
33.
Boyden, E. S. (2008) “Synthetic Neurobiology: Towards Engineering Brain
Circuits for Health and Human Augmentation,” Featured speaker, O’Reilly ETech (Emerging Technology)
Conference, San Diego, CA.
34.
Boyden, E. S. (2008) “Optical Neural Control: Understanding Normal and
Pathological Neuronal Circuit Dynamics,” Invited speaker, MIT Modern Optics and Spectroscopy Seminar
Series, Cambridge, MA.
35.
Boyden, E. S. (2008) “Optical Neural Control: Analyzing and Engineering Normal and Pathological Neuronal Circuit Dynamics,” Invited speaker, Psychiatry
Department, Yale University, New
Haven, CT.
36. Boyden, E. S. (2008) “Optical Neural
Control: Analyzing and Engineering Normal
and Pathological Neuronal Circuit Dynamics,” Invited speaker, Brain and Cognitive Sciences Department, MIT, Cambridge, MA.
37. Boyden, E. S. (2008) “Prosthetic Systems
for Therapeutic Optical Activation and Silencing of Genetically-Targeted
Neurons,” Invited speaker, MEMS for Implantable Medical Devices
Symposium, MIT, Cambridge,
MA.
38.
Boyden, E. S. (2008) “Optical Neural Control: Analyzing and Engineering Normal and Pathological Neuronal Circuit Dynamics,”
Invited speaker, 2008 Neuroscience Spring Symposium, University of Michigan.
Other talks and conference papers
1. Schoner, B., Cooper, C., Douglas, C., Boyden, E. S.,
Gershenfeld, N. (1998) “Cluster
Weighted Modeling for Time Series (How to Build a Digital Strad),”
Workshop on Nonlinear Dynamics
and Statistics, Issac Newton Institute, Cambridge.
2. Chen, G., Foletti, D. L., Boyden, E. S., Holz, R. W.,
Scheller, R. H., Tsien, R. W. (2000) "Differential functions of Rab3A
in regulating excitatory and inhibitory transmission in hippocampal
neurons," Society for
Neuroscience, Online.
3. Boyden, E. S., Raymond, J. L. (2002) "Induction,
timecourse, and persistence of mouse vestibulo-ocular reflex
adaptation," Society for
Neuroscience, Online.
4. Boyden, E. S., Chatila, T. A., Raymond, J. L. (2003)
"Motor memories in the vestibulo-ocular reflex of CaMKIV knockout
mice," Society for
Neuroscience, Online.
5. Mong, C., Cao, Y. Q., Boyden, E. S., Abbott, L. C.,
Tsien, R. W. (2003) "Properties of cortical spreading depression
across visual cortex in mice with spontaneous mutations in P/Q-type Ca+2
channels," Society for
Neuroscience, Online.
6. Liao, Y. J., Boyden, E. S., Tsien, R. W. (2003)
"Anti-calcium channel antibody affects cerebellar synaptic
transmission in a model of acquired channelopathy," Society for Neuroscience, Online.
7. Liao, Y. J., Safa, P., Boyden, E. S., Tsien, R. W.
(2004) "Antibody-mediated altered cerebellar transmission," Channels, Receptors, and Synapses Meeting,
Cold Spring Harbor, NY, April 2004.
8. Kimpo, R. R., Katoh, A., Boyden, E. S., Raymond, J.
L. (2004) "Patterns of generalization constrain encoding of learned
opposite changes in the vestibulo-ocular reflex," Society for Neuroscience,
Online.
9. Liao, Y. J., Safa, P., Boyden, E. S., Tsien R. W.
(2004) "Antibody-mediated channelopathy in a model of paraneoplastic
cerebellar ataxia," Society
for Neuroscience, Online.
10. Boyden, E. S., “Content-selective neural mechanisms
of memory encoding,” (2005) Catalyzing
the Future, Fannie
and John Hertz Foundation Symposium.
11. Boyden, E. S., Zhang, F., Bamberg, E., Nagel, G., and Deisseroth,
K. (2005) "Millisecond-timescale optical control of neural computation
via channelrhodopsin-2," Talk, at Society For Neuroscience, Online.
12. Zhang, F., Boyden, E. S., Deisseroth, K. (2005)
"Genetic and optical strategies for using channelrhodopsin-2 to
control diverse neural functions," Society for Neuroscience, Online.
13. Boyden, E. S., Safa, P., Pyle, J. L., Neogi, M.,
Raymond, J. L., Tsien, R. W. (2005) "Gene expression patterns in the
medial vestibular nucleus indicate the direction of motor learning in the
vestibulo-ocular reflex," Talk, at Society for Neuroscience, Online.
14. Wang H., Peca
J., Qiu L., Wang D., Zhang F., Boyden E. S., Deisseroth K., Feng G., Augustine G. J., Hall W.
C. (2006) “Circuit analysis using optical stimulation in ChR2 transgenic
mice,” Society for Neuroscience,
Online.
15. Han, X., and Boyden, E. S. (2007) "Two-Color,
Bi-Directional Optical Voltage Control of Genetically-Targeted
Neurons," Computational and
Systems Neuroscience (CoSyNe), Salt
Lake City, UT,
Feb 22-25, 2007.
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