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Major Publications
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Papers (peer-reviewed)
1. Schoner, B., Cooper, C., Douglas, C. L., Boyden, E. S., Gershenfeld, N.
A. (1999) “Data-driven
modeling of acoustical instruments,” Journal of the Acoustic Society of America 105(2):1328.
2. Maguire, Y., Boyden, E.
S., Gershenfeld, N. (2000) Toward a
table-top quantum computer, IBM Systems Journal 39:3&4, p.823.
3. Boyden, E. S., Raymond, J. L. (2003) Active reversal of motor memories
reveals rules governing memory encoding, Neuron 39(6):1031-42.
4. Boyden, E. S., Katoh, A., Raymond, J.
L. (2004) Cerebellum-dependent learning: The role of multiple plasticity
mechanisms, Annual Review of
Neuroscience 27:581-609.
5. Kimpo, R. R.*, Boyden, E. S.*, Katoh, A., Ke, M. C., Raymond, J.
L. (2005) Distinct
patterns of stimulus generalization of increases and decreases in VOR gain,
Journal of Neurophysiology
94(5):3092-3100. (* equal co-first
authors)
6. Boyden, E. S., Zhang, F., Bamberg,
E., Nagel, G., Deisseroth, K. (2005) Millisecond-timescale,
genetically-targeted optical control of neural activity, Nature Neuroscience 8(9):1263-1268.
7. Boyden, E. S., Katoh, A., Pyle, J. L., Chatila, T. A., Tsien, R.
W., Raymond, J. L. (2006) Selective engagement of plasticity mechanisms for
motor memory storage, Neuron 51(6):823-834.
8. Zhang, F., Wang, L.-P., Boyden, E. S., Deisseroth, K. (2006)
Optical control of excitable cells and Channelrhodopsin-2, Nature Methods 3(10):785-92.
9. Han, X. and Boyden, E. S.,
Multiple-color optical activation, silencing, and desynchronization of
neural activity, with single-spike temporal resolution. PLoS ONE, 2007. 2(3): p. e299.
PMCID: PMC1808431
10. Wang, H., Peca, J.,
Matsusaki, M., Matsusaki, K., Noguchi, J., Qiu, L., Wang, D., Zhang, F.,
Boyden, E. S., Deisseroth, K., Kasai, H., Hall, W. C., Feng, G., Augustine,
G. J. (2007) High-speed mapping of synaptic connectivity using
photostimulation in channelrhodopsin-2 transgenic mice, Proceedings of
the National Academy of Sciences 104(19):8143-848.
11. Liao, Y. J., Safa, P.,
Chen, Y.-R., Sobel, R. A., Boyden, E. S., Tsien, R. W. (2008) Anti-Ca2+ channel antibody
attenuates Ca2+ currents and mimics cerebellar ataxia
in vivo, Proceedings of the National Academy of
Sciences 105(7):2705-2710.
12. Han, X.,
Qian, X., Bernstein, J.G., Zhou, H.-H., Talei Franzesi, G., Stern, P.,
Bronson, R.T., Graybiel, A.M., Desimone, R., and Boyden, E.S. (2009) Millisecond-Timescale Optical Control of
Neural Dynamics in the Nonhuman Primate Brain, Neuron 62, 191-198.
Talks/conference papers (peer-reviewed)
1. Fletcher, R., Omojola, O., Boyden, E. S., Gershenfeld, N. (1999) “Reconfigurable Agile Tag Reader
Technologies for Combined EAS and RFID capability,” Conference
paper in Proceedings of the
Second IEEE Workshop on Automatic Identification Advanced Technologies,
Summit, New Jersey.
2. Fletcher, R., Omojola, O., Boyden, E., Gershenfeld, N.. (2002) "The
Design of Agile RFID Tags as a Catalyst for RFID Standardization," 3rd
IEEE Conference on Automatic Identification Technologies.
3. Boyden, E. S., Tsien, R. W., Chatila, T. A., Raymond, J. L.
(2003) "Is oppositely directed motor learning implemented with inverse
plasticity mechanisms?" Talk,
at Advances in Computational
Motor Control II, Symposium at the Annual Society for
Neuroscience Meeting, New Orleans,
Louisiana.
4. Boyden, E. S., Chatila, T. A., Raymond, J. L. (2004) "The
contribution of inverse plasticity mechanisms to cerebellum-dependent
learning." Talk,
at Computational and Systems
Neuroscience (CoSyNe), Cold
Spring Harbor, NY,
March 24-28, 2004.
5. Han, X., and Boyden, E. S. (2007) "Multiple-color optical
activation, silencing and desynchronization of neural activity, with
single-spike temporal resolution," Spotlight
Presentation, at Computational
and Systems Neuroscience (CoSyNe), Salt
Lake City, UT,
Feb 22-25, 2007.
6.
Bernstein, J. G., Han, X.,
Henninger, M. A., Ko, E. Y., Qian, X., Franzesi, G. T., McConnell, J. P.,
Stern, P., Desimone, R., and Boyden, E. S. (2008) Prosthetic systems for
therapeutic optical activation and silencing of genetically-targeted
neurons. Proc Soc Photo Opt Instrum Eng, 2008. 6854: p. 68540H. PMCID:
PMC2366937
7. Chow B, Han X,
Qian X and Boyden E (2009). High-performance halorhodopsin variants for
improved genetically-targetable optical neural silencing. Frontiers in
Systems Neuroscience. Conference Abstract: Computational and systems
neuroscience. doi: 10.3389/conf.neuro.10.2009.03.347
8. Boyden E,
Franzesi G T, Qian X, Li M, Han X, Borgers C, Kopell N J, Le Beau F and
Whittington M A (2009). Probing mechanisms of gamma rhythmogenesis with
cell type-specific optical neural control. Frontiers in Systems Neuroscience.
Conference Abstract: Computational and systems neuroscience. doi:
10.3389/conf.neuro.10.2009.03.299
Patents and Patent Applications
Over 140 patents or patents pending.
Theses
1. Boyden, E. S. (1999) Quantum Computing:
Theory and Implementation, Master's Thesis in Electrical Engineering and Computer Science,
Bachelor's Thesis in Physics, Massachusetts Institute of
Technology.
2. Boyden, E. S. (2005) Task-selective neural mechanisms of memory
encoding, Ph. D. Thesis in
Neurosciences, Stanford
University.
Byline Articles
1. Boyden, E. S. (2000) “Computational
and Theoretical Neuroscience: From Synapse to Circuitry,” National Institutes of Health/National
Institute of Neurological Disorders and Stroke, Technical Report
for Workshop of April 28, 2000.
2. Boyden, E. S. (2007) “Engineering the
Brain (‘Notebooks’ column),” Technology
Review, March/April 2007 issue, p. 34-35. Featured
on MIT homepage.
3. Boyden, E. S. "In Pursuit of Human
Augmentation." Ed Boyden's Blog. Technology Review. 9/17/07.
(http://www.technologyreview.com/blog/boyden/21839/).
4. Boyden, E. S. "Open
Philanthropy." Ed Boyden's Blog. Technology Review. 9/24/07.
(http://www.technologyreview.com/blog/boyden/21850/).
5. Boyden, E. S. "Synthetic
Neurobiology." Ed Boyden's Blog. Technology Review. 10/9/07.
(http://www.technologyreview.com/blog/boyden/21871/).
6. Boyden, E. S. "How to Think."
Ed Boyden's Blog. Technology Review. 11/13/07.
(http://www.technologyreview.com/blog/boyden/21925/). Featured
on MIT homepage.
7. Boyden, E. S. "Training a
Generation of Neuroengineers." Ed Boyden's Blog, Technology Review.
4/22/08. (http://www.technologyreview.com/blog/boyden/22055/).
8. Boyden, E. S. "Inverting the Core."
Ed Boyden's Blog. Technology Review. 7/14/08. (http://www.technologyreview.com/blog/boyden/22096/). Featured
on MIT homepage.
9. Boyden, E. S. "Research as a
Community-Building Activity" Ed Boyden's Blog. Technology Review. 7/28/08.
(http://www.technologyreview.com/blog/boyden/22102/).
10. Boyden, E. S.
"Averting Disasters, Preventing Problems." Ed Boyden's Blog. Technology
Review. 9/2/08.
(http://www.technologyreview.com/blog/boyden/22122/).
11. Boyden, E. S.
"Civilization as Experiment." Ed Boyden's Blog. Technology
Review. 1/19/09.
(http://www.technologyreview.com/blog/boyden/22512/).
Other writings
1.
Boyden, E. S. (1996) “The Practical Physicist's OpenGL tutorial,” Online.
2. Boyden, E. S. (1997) “Tree-based Cluster Weighted Modeling:
Towards A Massively Parallel Real-Time Digital Stradivarius,” Online.
3. Boyden, E. S. (1997) “A physics-based animation engine,” Online.
4. Altshuler, R. C., Boyden, E. S., Chase, C. C., Davis, B. M.,
Delatorre, F. J., Edelson, J., Elgart, J. D., Gates, H. G., Hancher, M. D.,
Hasan, L. M., Huang, A. S., Knaian, A. N., Lee, F., Newburg, S. O., Polito,
B. F., Reynolds, M. S., Smith, E. D., Warmann, E. C. (1998) “The ORCA-1: An
Autonomous Underwater Vehicle,” Online.
5. Boyden, E. S., El Rifai, O., Hubert, B., Karpman, M., Roberts, D.
(1999) “A High-Performance Tunneling Accelerometer,” Online.
Invited talks
1. Boyden, E. S. (2003) “How multiple plasticity mechanisms
contribute to versatile motor learning,” Invited talk, Stanford Neurosciences Program 2003 Retreat,
Monterey, CA.
2.. Boyden, E. S. (2005) “Causal roles of neurons and neural
circuits in learning and behavior,” Invited talk, Hertz Foundation Scholars 2005 Retreat, Pt. Reyes, CA.
3. Boyden, E. S. (2006) “Solving the brain systematically: tools for
the analysis and engineering of neural circuits,” Invited talk, Google Tech Talk series, Google, Mountain View, CA.
4. Boyden, E. S. (2006) “Cutting-edge technologies for the
systematic analysis of neural circuit dynamics,” Invited talk, UCSF, Program in Bioengineering Seminar Series, San Francisco, CA.
5. Boyden, E. S. (2006) “Resolving the computational role of
specific neural circuit elements,” Invited
talk, McGovern Institute, MIT, Cambridge,
MA.
6. Boyden, E. S. (2006) “Towards the analysis of cortical
computation via optical control of neural activity,” Invited talk, Computation and Neural Systems, Caltech, Pasadena, CA.
7. Boyden, E. S. (2006) “Enabling technologies for controlling neural circuit functions,” Invited talk, Brain Science Program,
Brown University,
Providence, RI.
8. Boyden, E. S.
(2006) “Technologies for the systematic analysis of neural circuit
function,” Invited talk, Center
for Brain Science, Harvard University, Cambridge, MA.
9. Boyden, E. S. (2006) “Neural Circuit Technology: Towards New
Brain Interfaces and Biological Tools,” Invited
talk, MIT Media Laboratory, MIT, Cambridge,
MA.
10. Boyden, E. S. (2006) “Engineering tools for engineering the
brain,” Invited talk, Division of
Engineering, Brown University, Providence,
RI.
11. Boyden, E. S. (2006) “Ultraprecise biological interfaces:
Controlling life with light,” Opening
night talk, Science Foo Camp, Google, Mountain View, CA.
12. Boyden, E. S. (2006) “Launching the Open Brain Stimulator
Project,” Session leader, Foo
Camp, O’Reilly Media, Sebastopol,
CA.
13. Boyden, E. S. (2006) “The future of neural devices,” Invited talk, Stanford Biodesign Program,
Stanford, CA.
14. Boyden, E. S. (2006) “Systematic approaches for understanding
neural circuit function,” Invited talk,
Center for Basic Neuroscience, UT
Southwestern Medical School, Dallas, TX.
15. Boyden, E. S. (2007), “Technologies
for the Precise Control of Neural Circuits,” Invited talk, Sloan-Swartz Seminars on Theoretical
Neurobiology, Salk Institute for Biological Studies, San Diego, CA.
16. Boyden, E. S. (2007) “New Technologies for Repairing Neural
Computations,” Invited talk, The
Stanley Center for Psychiatric Research, MIT, Cambridge, MA.
17. Boyden, E. S. (2007) “Technologies for engineering neural
circuit function,” Invited talk, Department
of Biological Engineering, MIT, Cambridge,
MA.
18. Boyden, E. S. (2007)
“Engineering the Brain: Towards Systematic Cures for Neural Disorders,” Featured speaker, MIT Media Lab H2.0
(Human 2.0) Symposium, MIT, Cambridge,
MA.
19. Boyden, E. S. (2007) “Engineering the Brain,” Invited talk, Department of
Psychiatry, Harvard/MGH, Boston,
MA.
20. Boyden, E. S. (2007) “Towards
enabling ultraprecise optical prosthetics,” Invited talk, Massachusetts Eye and Ear Infirmary, Boston, MA.
21. Boyden, E. S. (2007) "What Do We Need to Know, to do
Practical Cognitive Augmentation?" Invited
session leader, with Vaughan
Bell, Science Foo Camp, Google, Mountain
View, CA.
22. Boyden, E. S. (2007) “Brain-Engineering Technologies: Towards
Making us Smarter and
Happier,” Invited talk, AARP
National Event and Expo, Boston,
MA.
23. Boyden, E.
S. (2007) “Engineering the Brain,” Featured
speaker, Emerging Technologies (aka
TR ETC, EmTech) Conference at MIT, Sept. 25-27, 2007
24. Boyden, E. S. (2007) “Towards
ultraprecise optical prosthetics for treating pain: enabling technologies
and testing,” Invited speaker,
MGH-Charlestown, Boston, MA.
25. Boyden, E. S. (2007) “Controlling neural circuits: towards
synthetic neurobiology,” Invited
speaker, Harvard University Division of Applied Sciences, Cambridge, MA.
26. Boyden, E. S. (2007) “Principles
of controlling neural circuit functions: towards synthetic neurobiology,”
Invited speaker, Intel Corporation,
Santa Clara, CA.
27. Boyden, E. S. (2007) “Neural Control Technologies and Uses
Thereof,” Invited speaker, Innerspace
Foundation, Boston, MA.
28. Boyden, E. S. (2008) “Towards a New Generation of Intelligent
Brain Interfaces,” Invited speaker, Canon.
29. Boyden, E. S. (2008) “Engineering the brain,” Invited speakrer, Honda.
30. Boyden, E. S. (2008) “Talking to the Mind: New Approaches to Engineering
the Brain,” Invited speaker, The
International House of Japan.
31. Boyden, E. S. (2008) “New Ideas on how to Get Information Into
and Out of the Brain,” Invited
speaker, NEC.
32. Boyden, E. S. (2008) “New Ideas on how to Get Information Into
and Out of the Brain,” Invited
speaker, Hitachi.
33. Boyden, E. S. (2008) “Optical Neuron Control: Understanding and
Engineering Normal and Pathological Neural Dynamics,” Invited speaker, Boston
University.
34. Boyden, E. S. (2008) “Genetically-Targeted Optical
Neuromodulation: Towards Circuitwide Control of Normal and Pathological Neural
Computation,” Speaker (and workshop organizer/session
chair), Computational and Systems Neuroscience (CoSyNe) Workshop,
Snowbird, UT.
35. Boyden, E. S. (2008) “Synthetic Neurobiology: Towards
Engineering Brain Circuits for Health and Human Augmentation,” Featured speaker, O’Reilly ETech
(Emerging Technology) Conference, San
Diego, CA.
36. Boyden, E. S. (2008) “Optical Neural Control: Understanding
Normal and Pathological Neuronal Circuit Dynamics,” Invited speaker, MIT Modern Optics and Spectroscopy Seminar
Series, Cambridge, MA.
37. Boyden, E. S. (2008) “Optical Neural Control: Analyzing and
Engineering Normal and Pathological Neuronal
Circuit Dynamics,” Invited speaker, Psychiatry
Department, Yale University, New
Haven, CT.
38. Boyden, E. S. (2008)
“Optical Neural Control: Analyzing and Engineering Normal
and Pathological Neuronal Circuit Dynamics,” Invited speaker, Brain and Cognitive Sciences Department, MIT, Cambridge, MA.
39. Boyden, E. S. (2008)
“Prosthetic Systems for Therapeutic Optical Activation and Silencing of
Genetically-Targeted Neurons,” Invited
speaker, MEMS for Implantable
Medical Devices Symposium, MIT, Cambridge, MA.
40. Boyden, E. S. (2008) “Optical Neural Control: Analyzing and
Engineering Normal and Pathological Neuronal
Circuit Dynamics,” Invited speaker,
2008 Neuroscience Spring Symposium, University of Michigan.
41. Boyden, E. S. (2008) “Prosthetic Optical Fiber Systems for
Therapeutic Neural Activation and Silencing,” Invited speaker, Corning, Inc., Corning, NY.
42. Boyden, E. S. (2008) “Controlling neural
circuit elements to understand and engineer their roles in cognition,” Invited speaker, NYU, New York City, NY.
43. Boyden, E. S. (2008) “Optical
Neural Control: Analyzing and Engineering Normal
and Pathological Neuronal Circuit Dynamics,” Invited speaker, Neuron to Synapse Meeting (sponsored by
GeneExpression Systems), Harvard Medical School,
Boston, MA.
44. Boyden, E. S. (2008) "Repairing Neural Circuits: Principles
for Thinking About Epilepsy, Depression, and Schizophrenia," Invited speaker, Kavli
Science Journalism Workshop ‘Frontiers of Brain Science,’ Knight Science
Journalism Fellowships Program, MIT, Cambridge, MA.
45. Boyden, E. S. (2008) "Optical Neural Control: Analyzing and
Engineering Normal and Pathological Neuronal Circuit Dynamics," Invited speaker, Neuroimaging
Groups presentation, Marine Biology Laboratory, Woods Hole, MA.
46. Boyden, E. S. (2008) "What should we really be doing, to
understand neural systems?," Invited speaker, Grass Lab Tuesday night talk, Marine Biology Laboratory, Woods Hole, MA.
47. Boyden, E. S. (2008) “Optical
Brain Control: Analyzing and Engineering Normal and Pathological Neural
Circuit Dynamics,” Invited
speaker, Integrative Brain Reseach Symposium, Sapporo, Japan.
48. Boyden, E. S. (2008) “Optical
Brain Control: Analyzing and Engineering Normal and Pathological Neural
Circuit Dynamics,” Invited
speaker, NIMH Intramural Retreat, Gettysburg, PA.
49. Boyden, E. S.
(2008) “Optical Neuron Control: Towards Principles of Controlling Neural
Circuits,” Invited speaker, Integrative
Approaches to Brain Complexity Conference, Cold Spring Harbor/Wellcome
Trust, Wellcome Trust Conference Center, Hinxton, UK.
50. Boyden, E. S.
(2008) “Optical methods for controlling and correcting neural circuit
functions," Invited speaker,
"In Vivo Imaging in Recovery After Neural Injury: From Microimaging in Animal Models to
Functional Imaging in Man," Satellite Symposium to the American
Congress of Rehabilitation Medicine (ACRM) and the American Society of
Neurologic Rehabilitation (ASNR) Joint Educational Conference, Toronto,
Canada.
51. Barry, B., Boyden, E.,
Lang, E. (2008) "Software Technologies in the Delivery of Intelligent
Language Hypnosis Engines," Procedural Hypnosis: From Bench Top to
Bedside (Symposium), 59th Annual Scientific Program, October 24-26, 2008 Hypnosis
2008: Foundations & Frontiers, Society for Clinical and Experimental
Hypnosis.
52. Boyden, E. S.
(2008) "High-Precision Genetically-Targeted Optical Control of Normal
and Pathological Neural Computations," Invited speaker, HHMI Conference on Genetic
Manipulation of Neuronal Activity, Janelia Farm, Ashburn, VA.
53. Boyden, E. S.
(2008) "Optical Brain Control: Analyzing and Engineering Normal and
Pathological Neural Circuit Dynamics," Invited speaker, Carolina Biophysics Symposium, Chapel
Hill, NC.
54. Boyden, E. S.
(2008) "Optical Brain Control: Analyzing and Engineering Normal and
Pathological Neural Circuit Dynamics," Invited speaker, MIT Synthetic Biology Working Group,
Cambridge, MA.
55. Boyden, E. S.
(2009) “Novel Tools for Precisely Controlling Brain Functions,“ Invited speaker, Brain Research
Center and Student Biotechnology Network, University of British Columbia,
Vancouver, Canada.
56. Boyden, E. S.
(2009) “Optical Brain Control: Analyzing and Engineering Normal and
Pathological Neural Circuit Dynamics,“ Invited
speaker, CIMIT Forum, Boston, MA.
57. Boyden, E. S.
(2009) “Optical Brain Control: Analyzing and Engineering Normal and
Pathological Neural Circuit Dynamics,“ Invited
speaker, Dept. of Bioengineering, University of Pennsylvania,
Philadelphia, PA.
58. Boyden, E. S.
(2009) “Optical Control Of Normal and Pathological Neural Circuit
Computations,“ Invited speaker, McGovern
Symposium, Tsinghua University, Beijing, China.
59. Boyden, E. S.
(2009) "Optical Neural Control: Towards Systematic Parsing of the Role
of Cell Types in Normal and Abnormal Neural Computation," Invited
talk, MGH-HST Martinos Center Brainmap Series, Cambridge, MA.
60. Boyden, E. S.
(2009) "Optical Brain Control: Towards New Therapies for Brain
Disorders," Invited speaker, Optical Society of America (New England
Section Meeting), Cambridge, MA.
Other non-peer-reviewed talks and conference papers
25 other talks, conference papers, and book chapters.
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